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| Characterization of Gene Expression Changes Associated with MNNG, Arsenic, or Metal Mixture Treatment in Human Keratinocytes: Application of cDNA Microarray Technology Dong-Soon Bae,1 William H. Hanneman,2 Raymond
S.H. Yang,1 and Julie A. Campain1 1Center for Environmental Toxicology and Technology, 2Department
of Environmental and Radiological Health Sciences, Colorado State University,
Fort Collins, Colorado, USA
Abstract The identification of molecular markers related to critical biological processes during carcinogenesis may aid in the evaluation of carcinogenic potentials of chemicals and chemical mixtures. Work from our laboratory demonstrated that a single treatment with N-methyl-N´-nitro-N-nitrosoguanidine (MNNG) enhanced spontaneous malignant transformation of the human keratinocyte cell line RHEK-1. In contrast, chronic low-level exposure of cells to arsenic alone or in a mixture containing arsenic, cadmium, chromium, and lead inhibited malignant conversion. To identify changes in gene expression that influence these different outcomes, cDNA microarray technology was used. Analysis of multiple human arrays in MNNG-transformed RHEK-1 cells, designated OM3, and those treated with arsenic or the arsenic-containing metal mixture showed unique patterns of gene expression. Genes that were overexpressed in OM3 included oncogenes, cell cycle regulators, and those involved in signal transduction, whereas genes for DNA repair enzymes and inhibitors of transformation and metastasis were suppressed. In arsenic-treated cells, multiple DNA repair proteins were overexpressed. Mixture-treated cells showed increased expression of a variety of genes including metallothioneins and integrin ß4. These cells showed decreased expression of oncogenes, DNA repair proteins, and genes involved in the mitogen-activated protein kinase pathway. For comparison we are currently analyzing gene expression changes in RHEK-1 cells transformed by other means. The goal of these studies is to identify common batteries of genes affected by chemical modulators of the carcinogenic process. Mechanistic studies may allow us to correlate alterations in their expression with sequential stages in the carcinogenic process and may aid in the risk assessment of other xenobiotics. Key words: arsenic, cDNA microarray, cell transformation, chemical carcinogenesis, gene expression, human keratinocytes, metal mixture, molecular markers. Environ Health Perspect 110(suppl 6) :931-941 (2002) . http://ehpnet1.niehs.nih.gov/docs/2002/suppl-6/931-941bae/abstract.html |
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This article is part of the monograph Application of Technology to Chemical
Mixture Research.
Address correspondence to J.A. Campain, Quantitative and Computational Toxicology
Group, Center for Environmental Toxicology and Technology, Dept. of Environmental
and Radiological Health Sciences, Colorado State University, Ft. Collins,
CO 80523 USA. Telephone: (970) 491-8383. Fax: (970) 491-8304. E-mail: julie.campain@colostate.edu
This study was supported by the Agency for Toxic Substances and Disease
Registry cooperative agreement U61/ATU881475, and the National Institute for
Environmental Health Sciences, Superfund Basic Research Program Project P42
ES05949. We thank M. Hennessey at Colorado State University for help in microarray
analysis. The efforts of many colleagues at the Center for Environmental Toxicology
and Technology at Colorado State University are gratefully acknowledged.
Received 18 December 2002; accepted 18 June 2002.
Epidemiological evidence suggests that some, if not all, environmentally relevant
metals, including arsenic (As), cadmium (Cd), chromium (Cr), and lead (Pb),
are human carcinogens. Unfortunately, human exposures to such metals in both
the occupational and environmental setting are common occurrences. In fact,
because of high As (and other metal) concentrations in the drinking water supplies
in many countries, chronic toxicity and development of neoplastic lesions have
become health problems of global proportions (1,2). In the United States,
As, Cd, Cr, and Pb are the top four metals in site frequency count by the Agency
for Toxic Substances and Disease Registry (ATSDR) Completed Exposure Pathway
Site Count Report (3); three of these, As, Pb, and Cd, are among the
Superfund's top 10 priority hazardous substances (4). In addition, these
metals most often occur together; they are present in 8 of 10 and 5 of 10 of
the top 10 binary combinations of contaminants in soil and water, respectively
(5).
The mechanisms mediating metal-induced cytotoxicity and carcinogenicity are
currently unclear. Many laboratories, using a variety of experimental systems,
have carried out detailed studies in attempts to address these issues. From
this work, it has become apparent that metals affect multiple intracellular
targets and exert a variety of diverse effects on cells in vitro (6,7).
Studies suggest that different metals have unique primary mechanisms of action
that are cell specific and/or tissue specific (6,7). Additionally, the
activity of a metal in any given tissue is dependent on its speciation and metabolism
(6). To further complicate the picture, metals have been shown to interact
at multiple levels and, most likely, modify one another's cytotoxicity and/or
carcinogenic potential (8-11). As a result, we are still a long
way from a fundamental understanding of the actions of metals or metal mixtures
at the cellular level, particularly as they relate to toxic end points. Accurate
risk assessment of these highly relevant chemicals awaits our progress in this
area.
The skin is one important target organ for As-mediated pathological effects
and is a useful model system for mechanistic studies in this area. Chronic exposure
to As leads to skin disorders such as hyperkeratosis and, in many cases, carcinogenesis
(12,13). Both As and Cr, a well-known skin sensitizer, have substantial
effects on epidermal keratinocytes in vitro and in vivo; these
metals have been shown to alter expression of numerous growth regulatory factors,
to stimulate cell proliferation at low concentrations, and to inhibit the normal
process of differentiation (11,14-19). They have not, however, been
shown to be directly transforming in this cell type. In transgenic Tg.AC mice,
As acts as co-promoter during skin carcinogenesis in standard two-stage models
(20). These studies have suggested that transforming growth factor-
(TGF )
and granulocyte/macrophage-colony stimulating factor may be useful biomarkers
for As-associated carcinogenesis in keratinocytes; data from As-exposed human
subjects support this hypothesis (20). It is likely, however, that the
picture is much more complex than this and that the genes involved are more
numerous.
New technologies in expression analysis at the RNA and protein levels have
led to the development of the field of toxicogenomics, that is, the use of genetic
information to address issues such as these that are crucial in toxicology.
As an approach to defining the mechanism(s) behind selective chemical toxicity,
one may analyze gene expression changes in cells after exposure to the chemical(s)
of interest. Methodologies such as microarray analysis allow one to gain a comprehensive
view of the cellular pathways affected by the chemical(s) under scrutiny; comparison
may then be made between multiple chemicals having the same or differing toxicities.
Characterization of the relationship among chemical exposure, gene expression
alterations, and development of acute or chronic toxicity should help in delineating
important molecular events that are mechanistically linked to the different
toxic end points. In addition, once gene expression changes induced by individual
chemicals are identified and linked to functional end points, interactions in
chemical mixtures will be substantially easier to understand and predict.
We have used human keratinocytes as an experimental model to define molecular
events that may mediate the cytotoxicity and/or carcinogenicity of As alone
and in environmentally relevant metal mixtures. We describe here an evaluation
of the transforming potential of As alone and together with Cd, Cr, and Pb in
previously immortalized human epidermal keratinocytes compared with the potent
carcinogen N-methyl-N´-nitro-N-nitrosoguanidine (MNNG)
and negative controls. Genetic alterations induced by the different chemical
treatments and that may be involved in their selective toxicity and/or carcinogenicity
were analyzed by cDNA microarray technology.
Materials and Methods
Chemicals. Sodium meta-arsenite (NaAsO2), cadmium
chloride (CdCl2), chromium oxide (CrO3), chromium chloride
(CrCl3), lead acetate [(C2H3O2)2Pb·3H2O],
and dimethyl sulfoxide (DMSO) were purchased from Sigma Chemical Co. (St. Louis,
MO, USA). MNNG was obtained from Aldrich (Milwaukee, WI, USA).
Cell lines and culture reagents. The Ad12/SV40-immortalized
human keratinocyte cell line (RHEK-1) was obtained from J. Rhim (Center for
Prostate Disease Research, Rockville, Maryland, USA) (21-23). RHEK-1
was cultured in Dulbecco's modified Eagle's medium supplemented with 100 U/mL
penicillin, 0.1 mg/mL streptomycin, 10 mM l-glutamine, and 10% fetal bovine
serum (Summit Biotechnology, Ft. Collins, CO, USA). Methylcellulose (MC)-based
medium for determination of anchorage-independent growth (AIG) was obtained
as MethoCult from Stem Cell Technologies (Vancouver, Canada).
Establishment of keratinocyte cell lines after exposure to MNNG, As,
or As-containing mixture. RHEK-1 cells were plated at 2.5
105 cells per 75-cm2 flask. The conditions used for MNNG
treatment were those described by Rhim et al. (22). Briefly, 24 hr after
plating, cultures were fed with medium containing the positive control MNNG,
at 0.01 or 0.1 µg/mL, or 0.5% DMSO vehicle control. After 24 hr of exposure
(one treatment only), cells were washed with 1
phosphate-buffered saline (PBS) and then refed with culture medium. Cells were
subsequently subcultured weekly. RHEK-1 cells were also exposed to low doses
(9, 11, and 14 ppb) of As3+, the metal mixture, or water vehicle
controls, continuously for approximately 6 months, or 25 passages; that is,
the test chemicals were added to the culture medium at each subculturing. The
concentrations of As used corresponded to the LD2.5, LD5,
and LD10, as determined in our laboratory for this cell type (11).
The low-mixture treatment group was composed of 1, 10, 62, and 33 ppb of As,
Cr, Cd, and Pb, respectively. In efforts to more closely mimic the actual exposure
scenario with Cr, these chronic studies were carried out with a mixture of 1:1
Cr3+ and Cr6+. The high-mixture treatment group was exposed
to 14, 104, 618, and 332 ppb of As, Cr, Cd, and Pb, respectively. The concentrations
of the four-metal mixture used corresponded to the LD1 (low mixture)
and LD10 (high mixture) of each individual metal in RHEK-1 cells.
The resulting cultures were designated as follows: OM1 (DMSO-treated control
cells); OM2 (0.01 µg/mL MNNG); OM3 (0.1 µg/mL MNNG); water control;
As-Low (9 ppb As); As-Med (11 ppb As); As-High (14 ppb As); Mix-Low (LD1
mixture); and Mix-High (LD10 mixture).
MC cloning. MC cloning as an index for AIG was carried out every
two or three passages for the cultures treated with As, metal mixture, or MNNG.
For MC cloning, 1
104 cells/mL were plated in 35-mm gridded dishes in triplicate in
1.3% MC. The number of colonies was counted via manual inspection under phase-contrast
microscopy after 2 weeks and is expressed as percentage cloning efficiency.
Analysis of saturation density. Saturation density was measured
as the maximum number of cells obtained in cultures as a function of time. Cells
(1 104
/cm2) were plated in 25-cm2 culture flasks in triplicate.
Viable cells at 5, 8, 10, 12, 15, and 17 days after initial plating were counted
by trypan blue exclusion on a hemocytometer. Culture medium was changed every
3 days. Unattached cells in the culture medium were pelleted by centrifugation
and also counted.
Analysis of tumorigenicity in immunocompromised mice. The tumorigenicity
assay was carried out using a modification of Rhim et al. (22). Briefly,
cells from passage 16 and passage 25 (OM1 and OM3) or passage 25 (As-Low, As-High,
Mix-Low, Mix-High, and the appropriate water controls) were collected by 0.05%
trypsin treatment. Cells (2
106) in 0.1 mL PBS were injected subcutaneously into the interscapular
region of 4- to 8-week-old male Balb/c nu/nu mice. The mice were
observed weekly for 3 months for tumor development and growth. The tumors were
measured by caliper, excised, and fixed in 10% formalin before sectioning and
slide preparation. Tissue sections were stained with hematoxylin and eosin and
characterized by histopathological analysis.
RNA preparation. Total RNA was isolated from cultures of control
and chemically treated RHEK-1 cells (at ~70% confluence) at passage 25 using
the RNAqueous kit (Ambion, Austin, TX, USA) and following the manufacturer's
directions. RNA purity and concentration were assessed by determination of absorption
at 260 and 280 nm.
cDNA synthesis and radioactive labeling for the Clontech Atlas Human
Cancer 1.2 Array. Total RNA (2 µg per reaction) was reverse transcribed
from each test sample with superscript in the presence of [ -32P]deoxyadenosine
5´-triphosphate (Amersham, Piscataway, NJ, USA) using the Atlas Pure Total
RNA Labeling System (Clontech, Palo Alto, CA, USA). Unincorporated isotope was
removed by gel filtration in Chroma Spin-200 columns (Clontech). The Atlas Human
Cancer 1.2 Array was supplied by the manufacturer on nylon membranes; 1,185
genes were analyzed using this array. These membranes were prehybridized for
30 min at 68°C in ExpressHyb (Clontech) containing 0.1 mg/mL sheared salmon
sperm DNA. They were then incubated with 2
106 cpm of radiolabeled cDNA probe (control OM1 or test sample OM3;
water control or test samples As-High and Mix-High) per milliliter of ExpressHyb
buffer overnight at 68°C. After high-stringency washes in 2
standard saline citrate (SSC), 1% sodium dodecyl sulfate (SDS) at 68°C,
the blots were exposed to storage phosphor screens (Molecular Dynamics, Sunnyvale,
CA, USA). Signals were scanned and captured using a Storm 860 Phosphorimager
and ImageQuant software (Molecular Dynamics). Gene expression images were quantified
using AtlasImage 1.0 program (Clontech) by the Atlas Technology Center. Relative
changes in gene expression were determined by normalizing the hybridization
signals to the signals obtained from all the genes included in the array. Genes
that demonstrated 2-fold
changes in expression between control and treatment were reported.
cDNA synthesis and fluorescent labeling for New England Nuclear arrays.
Two microarrays from New England Nuclear (NEN; Boston, MA, USA) were
used to analyze gene expression changes in OM3 versus OM1 and As-High and Mix-High
versus the appropriate water controls. These were the NEN Human 2400 (2,400
genes analyzed) and Oncogene/Tumor Suppressor (325 genes analyzed) arrays. In
addition, gene expression in OM3 compared with OM1 was analyzed by the NEN Kinase/Phosphatase
array (275 genes analyzed); this latter analysis was not carried out on the
metal-treated cultures. We do not, therefore, know how the genes contained within
this array are affected in the metal-treated cells. Synthesis and labeling of
cDNA were carried using the MICROMAX Direct cDNA Microarray System (NEN) following
the manufacturer's directions. Briefly, 100 µg or 40 µg of total RNA
for the Human 2400 or Oncogene/Tumor Suppressor arrays, respectively, was reverse
transcribed from each test sample with AMV Reverse Transcriptase in the presence
of cyanine 3 (Cy3) (for OM1 and water controls) and cyanine 5 (Cy5) (for OM3,
As-High, and Mix-High) using MICROMAX. For the NEN Kinase/Phosphatase array,
40 µg of RNA was used from OM1 and OM3. Labeled cDNA from control and treated
samples was purified by isopropyl alcohol precipitation. MICROMAX microarray
slides were used that contained the three different arrays. The entire reaction
from the combined Cy3- and Cy5-labeled probes in hybridization buffer (NEN)
was pipetted underneath slide coverslips. Overnight hybridization was performed
in a microarray hybridization cassette from Corning (Corning, NY, USA) at 65°C.
After three consecutive washes at room temperature in 0.5
SSC/0.01% SDS, 0.06
SSC/0.01% SDS, and 0.06
SSC, respectively, the glass slide was placed in a 50-mL polypropylene tube
and centrifuged at 500 g
for 5 min to remove excess liquid before scanning. The slide was scanned in
a BioChip Imager (Packard, Meriden, CT, USA). Laser and photomultiplier tube
voltages were adjusted manually to maximize the signal-to-noise ratio. Cy3 and
Cy5 signal intensities were standardized relative to one another by comparing
the total signal intensities of all spots in each channel. The scanner output
images were quantified using ScanAlyze (software developed by M. Eisen, University
of California at Berkeley).
Statistical analysis. One-way analysis of variance (ANOVA) followed
by Dunnett's test (24) was used to analyze differences between control
and chemical-treated samples in saturation density, MC cloning, and tumorigenicity
studies. p-Values < 0.05 were considered statistically significant.
Results
As and an As-containing metal mixture inhibit and MNNG enhances malignant
transformation in RHEK-1 human keratinocytes. To analyze the effects
of As, both alone and in metal mixtures, on malignant transformation, we used
the virally immortalized human epidermal keratinocyte cell line RHEK-1. To carry
out this analysis, RHEK-1 cells were treated chronically with increasing concentrations
of either As or a mixture of As, Cd, Cr, and Pb; this scenario was chosen to
more closely reflect actual human exposures. For comparison, we also treated
RHEK-1 with MNNG, a potent carcinogen that has previously been shown to malignantly
transform this cell type.
With continued culture after chemical treatment, we were able to observe substantial
changes in morphology in our RHEK-1 populations; however, these alterations
were not the same in all cultures and were not consistently associated with
malignant transformation. Solvent control RHEK-1 cells underwent substantial
morphological changes with increasing time in culture, becoming very pleiomorphic
with distinctive nests of cobblestone-like cells surrounded by spindlier, elongated
layers of cells. It was noteworthy, however, that at approximately passage 13,
RHEK-1 cells treated with both the low and high concentrations of MNNG began
to develop foci of piled cells from which round cells were continually being
released; these alterations were similar to those previously described by Rhim
and colleagues (21-23) and were not present in the corresponding
DMSO-treated OM1 cells. With continued subculturing, in populations treated
with 0.1 µg/mL MNNG, these foci began to dominate the entire flask. By
passage 16, these latter cultures consisted of substantially larger cells that
were relatively homogeneous in size and shape; this line was named OM3. Cultures
treated with 0.01 µg/mL MNNG (OM2) also began to pile up in foci; however,
the cells in these cultures remained small, similar to the control cells. The
situation with the As- and metal mixture-treated populations was very different
from that of cells treated with MNNG. After undergoing chronic, long-term exposure
to either As or the metal mixture at multiple concentrations, populations became
increasingly uniform in both size and morphology compared with the water control
cultures. The cells in the As- and mixture-treated cultures were flat and had
a regular polygonal epithelial appearance. This effect was dose dependent for
both As and the metal mixture. In addition, these cultures had no piling or
rounded cells, as was seen with the MNNG-treated populations.
At passage 4 after treatment, all cultures were analyzed biweekly for their
ability to grow in semisolid medium, that is, in an anchorage-independent manner.
As early as passage 11, OM3 gained the AIG+ phenotype (Table 1). The cloning
efficiency of OM3 at passage 11 averaged 0.34% compared with 0.02% in control
OM1. While working with RHEK-1, we have observed that these cells spontaneously
become less dependent on adherence for growth with increasing time in culture.
After 25 passages we noted an increase in the AIG of OM1; these cells formed
colonies with an efficiency of 2.1% in MC. However, at this same passage 25,
MC cloning ability in OM3 was approximately 19%. OM2 did not at any time tested
exhibit a significantly higher cloning efficiency than OM1. In contrast to previous
findings (22), treatment of RHEK-1 with the lower concentration of MNNG
(0.01 µg/mL) did not detectably affect the malignant behavior of the cells
during the time course of our studies.
In contrast to what we observed with MNNG-treated cells, As-High and Mix-High
cultures did not exhibit increased AIG compared with water controls at any passage
or under any condition examined in our studies. However, spontaneous progression
in water control RHEK-1 cells was quite rapid, even compared with the progression
observed in OM1; by passage 11, the water controls exhibited AIG+ growth of
1.4-1.9%. By passage 16, these controls formed colonies in MC with efficiencies
of 1.46 and 2.63%, respectively. Through passage 16, chronic treatment of RHEK-1
cells with As or the metal mixture acted in a dose-dependent manner to partially
inhibit this spontaneous acquisition of AIG+ in RHEK-1. By passage 25, however,
AIG+ in As-High and Mix-High were very similar to water control cultures. The
results of this analysis are shown in Table 1.
Increased saturation density may be another characteristic of malignant transformation.
Thus, we measured the saturation density of OM1, OM2, OM3, As-High, Mix-High,
and the water controls (Table 2). Interestingly, and unexpectedly, when assayed
at passage 16, OM3 showed decreased saturation density compared with OM1; the
maximum cell densities reached in these cultures were 5.7 and 3.2
105 cells/cm2 for OM1 and OM3, respectively. OM2 did exhibit
significantly increased saturation density compared with both OM1 and OM3; this
phenotypic change is likely related to the smaller size of OM2 cells (especially
when compared with OM3) and not to malignant transformation. We also observed
lower saturation density in RHEK-1 populations treated with the high concentrations
of As and the metal mixture compared with controls; the ratios of the maximum
cell density in these cultures were 4.2:6.2 and 2.9:4.0 for As-High and Mix-High
versus the water controls, respectively.
To test the tumorigenic potential of the chemically treated RHEK-1 cells,
Balb/c nu/nu mice were used. After subcutaneous injection of the
control and treated cell populations into immunocompromised mice, several cultures
rapidly (within 3 weeks) and consistently formed large dorsal tumors (Table
3). Passage 16 OM3 cells formed tumors in all injected mice in 3 weeks. Tumors
formed in mice by passage 25 OM3 cells were significantly larger; the average
sizes of the resulting tumors from these time points were 6.6 mm and 10.7 mm,
respectively. At 3 weeks, in mice injected with passage 16 OM1 cells, no tumors
were observed; however when OM1 cells were cultured through 25 passages before
being tested for tumorigenicity, the results were somewhat different. These
passage 25 cells had progressed to the point where they formed small tumors
(2.4 mm average tumors in 3 of 10 mice) by 3 weeks after injection. With both
passage 16 and passage 25 OM1 cells, by 3 months after injection tumors of approximately
6-7 mm were observed in recipient mice, again supporting the hypothesis
that RHEK-1 spontaneously progresses to a low-level malignancy with continued
time in culture. Observations from our studies on As and the metal mixture-treated
cultures were not highly surprising, given the MC cloning results described
above. Neither As-High nor Mix-High cells were tumorigenic under these conditions,
even at passage 25, when they had acquired the ability to grow in an anchorage-independent
manner. In contrast, by 3 weeks, both water control cell populations formed
tumors in a portion of injected mice; cells treated with the lower concentrations
of As and the metal mixture also were tumorigenic (Table 3). Histopathological
exam of excised tumors from each culture demonstrated that they were all poorly
differentiated squamous cell carcinomas. Chromosome painting and karyotypic
analysis confirmed that these tumors arose from the parental RHEK-1 cells.
Analysis of changes in gene expression that arise during treatment of
RHEK-1 cells with MNNG, As, or the four-metal mixture. We were interested
in characterizing changes in gene expression that may be involved in mediating
the different outcomes after treatment of RHEK-1 cells with MNNG, As, or the
mixture of As-High, Cd or the mixture of, Cr, and Pb-High. To explore this issue,
we have begun to use cDNA microarray technology to identify mRNA species that
are over- or underexpressed in chemically treated versus control cells. Our
first observation from this analysis was that the patterns of gene expression
in the treated cultures were unique, being distinct both from their respective
controls and from cells that were exposed to different chemicals (Tables 4-6).
Among the three chemically treated cell populations, OM3 showed the most numerous
alterations in gene expression (Table 4). Not only did we use an additional
array for studying OM1 and OM3, but this finding may also be attributed in part
to the fact that MNNG is a very effective DNA-damaging agent and mutagen and
likely has genomewide effects. In all, 72 and 41 genes represented on the combined
arrays were induced and suppressed, respectively, in OM3 compared with OM1 cells.
In As-High a total of 52 genes were altered in their expression compared with
water controls; of these, 23 showed increased and 29 showed decreased expression
(Table 5). Last, 13 genes were induced in the Mix-High populations, and 51 were
suppressed (Table 6). A comprehensive list of genes induced or suppressed under
each exposure scenario, along with their assigned (putative) function, is shown
in Tables 4-6.
Among the genes showing increased expression in OM3 compared with the OM1
control population were many that could potentially have impacts on cell proliferation,
including a) cell cycle regulators (RBQ-3, cyclins H and
A1, and CDK5); b) growth factors (int-6, irp,
and PDGF2); and c) oncogenes, several of which are involved in
the mitogen-activated protein pathway (MAP) kinase signaling pathways, including
an Erk-3-related protein, JNK-2, PKCµ, A-raf-1,
and Net (Table 4). Additionally, genes encoding proteins that modulate
cell-cell or cell-matrix interactions were also induced; among these
genes were macrophage inhibitory cytokine MIC1, nerve growth factor-inducible
PC4 homolog, and several protease inhibitors. Increased expression of several
tumor-associated markers, such as melanoma (A32)-associated and prostate carcinoma-associated
antigens and the adenomatus polyposis coli (APC) protein, was consistent with
the malignant phenotype of OM3. Last, several proteins involved in DNA damage
response and/or apoptosis, including p53-associated protein and caspase 4 were
expressed at higher levels in the transformed line.
There were substantially fewer genes with decreased expression in OM3 compared
with OM1 (Table 4). Among these genes were representatives from several functional
categories. Particularly striking were repressions in a) multiple protein
tyrosine phosphatases, including PTP1C, PTP ,
PTP ,
and receptor-type protein tyrosine phosphatase ;
b) cell-protective mechanisms such as the ultraviolet (UV) excision repair
protein RAD23A, glutathione synthase, and glutathione-S-transferase (GST);
and c) integrin ß4, cadherin 8, and a keratin-related protein.
Additionally, several putative inhibitors of transformation and metastasis such
as RARRES3, suppressin, tumor suppressor protein 101F6, and PCDH7 exhibited
decreased expression in OM3.
In our studies, several noteworthy genes/gene families were altered in their
expression in As-treated cells (Table 5). In these populations, the most striking
induction was seen in DNA damage response genes, including XRCC1, RAD23A,
endonuclease III homolog 1 (HNTH1), DNA repair protein MLH1, and
a heat shock protein (HSP) 40 homolog. Among other representative
inductions were genes involved in cell cycle regulation (jun-B, FRA-1, MTS1/p16-INK4,
PCNA, early growth response protein 1); oncogenes (EHK-1 receptor tyrosine
kinase); two putative tumor suppressor genes (EXT1 and RDA32);
and genes for proteins regulating invasion and/or cell-cell interactions,
BMP4 and TIMP-3. Genes suppressed in As-treated populations included
those for cytoprotective molecules (cytosolic superoxide dismutase [SOD], glutathione
synthetase, and glutathione-S-transferase), ICAM-1, stratum
corneum chymotryptic enzyme, MIC1, and bikunin. In our studies,
treatment with As also was observed to inhibit expression of a variety of cytokeratins,
including 6E, 8, 13, 18, and an unidentified 58-kDa type II protein.
The metal mixture-treated populations had a somewhat different spectrum
of gene alterations than did cells exposed to As alone (Table 6). Relatively
few genes showed increased expression under this exposure scenario. Genes involved
in cell cycle regulation that were induced included jun-B, MTS1/p16-INK4,
FRA1, and nuclear factor 1-X. DNA damage response/cytoprotective/apoptosis
mechanisms induced included multiple metallothioneins, caspase 10, and HNTH1.
Also induced under these conditions were integrin ß4 and BMP4. In contrast,
many genes were repressed by metal mixture treatment compared with control.
Cell cycle regulatory proteins and cytokines showing decreased expression included
WAF1/CIP1, MAPKK6, GATA6, JNK2, TGFß2, and mitogen-responsive phosphoprotein
DOC2. Many oncogenes were suppressed, including int-1, Ret, Blym-1,
n-myc, DBL, and the EHK-1 receptor tyrosine kinase. Among
the DNA damage response/cytoprotective/apoptosis genes showing decreased expression
were ERCC2, ERCC5, MSH2, TDG, cytosolic SOD, and
catalase. Many additional kinases/phosphatases were altered in their expression,
including an ERK3-related protein kinase, HCK, several creatine kinases,
HYL, and PRL-1.
Detailed analysis of data from OM3, As-High, and Mix-High demonstrated that,
in addition to numerous chemical-specific gene changes, several genes were altered
in a similar or opposite manner under the different exposure conditions (Table
7). There were no genes commonly induced by MNNG and As or the metal mixture,
although the RARRES3 gene (a retinoid-induced tumor suppressor) was suppressed
under all three treatment conditions. As and metal mixture treatment did increase
expression of a common group of genes, including JunB, FRA1, MTS1, and
a member of the TGFß family, BMP4 (25,26). These
two exposures also commonly suppressed expression of tumor antigen L6, SOD1,
and MIC1, another member of the TGFß family. Interestingly, the
largest group of genes was those oppositely regulated by MNNG and the metal
mixture, among which were JNK2, ERK3, nuclear phosphatase PRL-1,
an unidentified Ser/Thr protein kinase, integrin ß4, and
vimentin.
Discussion
To develop more efficient methodologies for evaluating carcinogenic potentials
for environmentally relevant chemicals such as As and other metals, we have
attempted to identify molecular markers involved in the process of carcinogenesis
in keratinocytes. In our studies, the Ad12/SV40-immortalized human epidermal
keratinocyte cell line RHEK-1 slowly and spontaneously progressed to a malignant
phenotype with continued passage. Progression of RHEK-1 was enhanced greatly
by treatment of the cells with the strong initiating agent MNNG. In contrast,
treatment of RHEK-1 with DMSO, As alone, or As in the presence of Cd, Cr, or
Pb acted to inhibit this progression. Microarray analysis allowed us to catalog
widespread changes in gene expression in treated cells that may potentially
correlate with these different toxicological end points.
Several investigators have taken advantage of the SV40 virus in development
of immortalized and/or "transformed" cell lines from normal primary tissues
(27-29). These studies have described a variety of phenotypic changes
frequently associated with expression of viral T antigens in infected cultures,
including increased cloning efficiency and proliferative potential, unlimited
life span in culture, and anchorage- and/or growth factor-independent growth.
In these studies, clones surviving "crisis" are highly variable in their growth
properties initially and change fairly rapidly with increasing time in culture
(27,30). Transformation by SV40 appears to progress over time, with acquisition
of AIG+ and tumorigenicity occurring spontaneously in some cell lines. In our
studies, RHEK-1 progressed to the AIG+ or tumorigenic phenotype at vastly different
rates depending on the chemical treatment the cells received. Although this
phenomenon may have been due to either genetic or epigenetic mechanisms, depending
on the chemical, specific alterations in gene expression are, without doubt,
involved.
In studies such as these, where large numbers of genes are identified and
assignment of a mechanistic role to specific gene changes is the desired goal,
it is the analysis and interpretation of data that become difficult. In our
studies, we need to compare not only each chemically treated RHEK-1 line with
its appropriate control, but also gene expression changes in cells treated with
transformation-enhancing (MNNG) versus transformation-inhibitory (As and the
metal mixture) chemicals. To further complicate the picture, genes altered in
their expression after treatment of cells with potentially carcinogenic agents
likely fall into at least two categories. The first would be genes directly
involved in or mediating some aspect of malignant transformation, that is, genes
whose function or lack thereof is necessary for neoplastic progression. The
second group would be composed of genes that are altered as a result of cytotoxic
stress on the cell and are not involved in the malignant phenotype at all. As
a first approach, analysis of the known or putative functions of identified
genes may yield some insight into their potential roles in the toxicological
end point of interest, that is, transformation or toxicity.
From the alterations in gene expression that we observed in our studies, one
could formulate several interesting hypotheses concerning transformation-specific
effects on RHEK-1. More rapid conversion of this keratinocyte cell line to the
tumorigenic phenotype by MNNG could potentially be mediated by constitutively
increased expression of growth factors and/or oncogenes such as PDGF, members
of the MAP kinase signaling pathway, and/or the cyclins or cyclin-dependent
kinases. Activation of the MAP kinase pathway is the primary response to mitogenic
stimuli in all cell types (31). Multiple genes involved in this pathway
were selectively induced in MNNG-transformed cells compared with As- and metal-mixture-treated
populations. In Mix-High populations, which were nontumorigenic, the JNK2,
the ERK3 homolog, and MAPKK6 genes demonstrated substantially
decreased expression compared with water controls; these findings are consistent
with a role for activation of the MAP kinase pathway in progression of RHEK-1.
One can also speculate that altered expression of a host of protein phosphatases
in a cell, such as was observed in OM3, would have profound impacts on its proliferative
potential and facilitate its ultimate transformation. Protein phosphatases are
crucial players in regulation of the mitogenic cascade, among other functions,
and changes in their expression have been strongly linked to carcinogenesis
in many studies (32). Because malignant transformation is a multistep,
and very complex, process, it is likely that many of the alterations in gene
expression that we detected (as well as others) are involved.
Rhim et al. (21,22) and Yang et al. (23) have been able to derive
multiple malignant lines from RHEK-1 by treating the cells with chemicals such
as MNNG, 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), and 4-nitroquinoline-1-oxide
(4NQO), exposing them to X ray, and transfecting them with oncogenic viruses.
In collaborative studies with these investigators, we will compare gene expression
patterns in these various lines with OM1 and OM3; the primary goal here would
be to identify, if there is one, a common battery of genes altered during progressive
transformation of RHEK-1 by multiple chemical and physical agents. Having several
transformed lines with the same basic wild-type background of gene expression
should greatly facilitate our identification of genes potentially involved in
malignant progression of this cell type. Our results from these studies could
then be tested with other cell types transformed by various means.
Many types of studies, both epidemiological and in the laboratory, have demonstrated
that most, if not all, of the metals used in our work are human carcinogens.
However, in our hands, both As and the As-containing metal mixture were inhibitory
to malignant progression of RHEK-1. This is not the first demonstration of an
"anticarcinogenic" effect of As; the metal has been shown to inhibit formation
of GST-P-positive hepatic foci in chemically treated rats in vivo
and is currently being used in chemotherapeutic regimens for acute promyelocytic
leukemia (33-36). Although the mechanism of arsenic trioxide's clinical
effects remain unclear, it has been shown to induce apoptosis in leukemic and
lymphoid cell lines in vitro (35,36). The observed changes in
gene expression after exposure to As alone were not inconsistent with an anticarcinogenic
effect and indicated that the metal generally stimulated DNA-protective mechanisms
in exposed cells. Particularly interesting was the strong induction of multiple
DNA repair proteins, including XRCC1, HNTH1, RAD23A, and MLH1, in the As-High
populations, which may be a function of the clastogenic and/or comutagenic effects
of the metal (37-44). Induction by As of multiple regulators of
the cell cycle (jun-B, c-fos/FRA-1, and EGR1) has also been seen in other studies
where it is assumed that the metal is acting to promote carcinogenesis (45,46).
Obviously, given the complexity of the cell, it is highly likely that the carcinogenic
or anticarcinogenic effect of the metal in any one situation or cell type is
dependent on batteries of genes working together and not any single gene change.
Because the metal mixture also acted to inhibit transformation of RHEK-1 in
our studies, common gene expression changes seen in both As-High and Mix-High
cells may be important in the process and worth exploring in more detail.
Alterations in gene expression that differ depending on whether As is alone
or mixed with other metals are also highly interesting and may potentially help
us to understand the dose-dependent metal-metal interactions we have observed
in these cells in other short-term cytotoxicity studies in the lab (11,47).
For example, in contrast to the situation in As-High, only one of the same DNA
repair genes, HNTH1, was induced in cells treated with the As-containing
metal mixture, despite the fact that the concentration of As was the same in
both cultures. In fact, we identified four DNA repair proteins in this latter
population that were suppressed, likely by one of the other metals in the mixture.
In addition, two metallothionein genes showed increased expression in Mix-High,
certainly a result of the presence of Cd in the mix; cells treated with As alone
did not exhibit increased expression of these important cytoprotective molecules
and, in fact, showed decreased glutathione synthase and GST levels. Certainly,
these findings have implications for the cytotoxicity of the metals alone and
together in simple or complex mixtures.
In conclusion, we have used DNA microarray analysis to identify changes in
gene expression in the human keratinocyte cell line RHEK-1 in response to treatment
with chemicals that enhance or inhibit its spontaneous malignant transformation.
Our studies have shown unique and intriguing gene expression patterns in cells
treated with either As, an As-containing chemical mixture, or the potent mutagen
MNNG. Meticulous analysis of gene expression patterns in a variety of cell types,
as described above, and timewise comparison of defined changes with acquisition
of transformation-associated characteristics such as AIG and tumorigenicity
should allow us to identify potential players in each step of the process of
malignant conversion. In future studies, these "transformation-associated" molecular
markers will be used in biologically based dose-response models to predict
the carcinogenic potentials of other xenobiotics. Additionally, once we have
a clear mechanistic understanding of how single carcinogenic agents work and
have been able to model the process using computational techniques, chemical
mixtures will be much more amenable to study. Linkage of models through common
metabolic pathways and/or mechanisms of cytotoxicity will allow a more comprehensive
view of the potential health/carcinogenic effects of complex chemical mixtures. |
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